diff --git a/configure.ac b/configure.ac
index 9686ac53..687b221c 100644
--- a/configure.ac
+++ b/configure.ac
@@ -262,7 +262,6 @@ if test "x$GCC" = "xyes" ; then
   dnl This one too.
   JE_CFLAGS_ADD([-Wno-missing-field-initializers])
   JE_CFLAGS_ADD([-Wno-missing-attributes])
-  JE_CFLAGS_ADD([-Wstrict-prototypes])
   JE_CFLAGS_ADD([-pipe])
   JE_CFLAGS_ADD([-g3])
 elif test "x$je_cv_msvc" = "xyes" ; then
diff --git a/scripts/run_static_analysis.sh b/scripts/run_static_analysis.sh
index db870689..68ceae55 100755
--- a/scripts/run_static_analysis.sh
+++ b/scripts/run_static_analysis.sh
@@ -13,7 +13,7 @@ compile_time_malloc_conf='background_thread:true,'\
 'prof_unbias:false,'\
 'prof_time_resolution:high'
 
-./autogen.sh \
+EXTRA_CFLAGS='-Wstrict-prototypes' EXTRA_CXXFLAGS='-Wstrict-prototypes' ./autogen.sh \
 	--with-private-namespace=jemalloc_ \
 	--disable-cache-oblivious \
 	--enable-prof \