rtree_node_init spinlocks the node, allocates, and then sets the node.
This is under heavy contention at the top of the tree if many threads
start to allocate at the same time.
Instead, take a per-rtree sleeping mutex to reduce spinning. Tested
both pthreads and osx OSSpinLock, and both reduce spinning adequately
Previous benchmark time:
./ttest1 500 100
~15s
New benchmark time:
./ttest1 500 100
.57s
Fix zone_force_unlock() to reinitialize, rather than unlocking mutexes,
since OS X 10.12 cannot tolerate a child unlocking mutexes that were
locked by its parent.
Refactor; this was a side effect of experimenting with zone
{de,re}registration during fork(2).
The raw clock variant is slow (even relative to plain CLOCK_MONOTONIC),
whereas the coarse clock variant is faster than CLOCK_MONOTONIC, but
still has resolution (~1ms) that is adequate for our purposes.
This resolves#479.
glibc defines its malloc implementation with several weak and strong
symbols:
strong_alias (__libc_calloc, __calloc) weak_alias (__libc_calloc, calloc)
strong_alias (__libc_free, __cfree) weak_alias (__libc_free, cfree)
strong_alias (__libc_free, __free) strong_alias (__libc_free, free)
strong_alias (__libc_malloc, __malloc) strong_alias (__libc_malloc, malloc)
The issue is not with the weak symbols, but that other parts of glibc
depend on __libc_malloc explicitly. Defining them in terms of jemalloc
API's allows the linker to drop glibc's malloc.o completely from the link,
and static linking no longer results in symbol collisions.
Another wrinkle: jemalloc during initialization calls sysconf to
get the number of CPU's. GLIBC allocates for the first time before
setting up isspace (and other related) tables, which are used by
sysconf. Instead, use the pthread API to get the number of
CPUs with GLIBC, which seems to work.
This resolves#442.
Rather than relying on two's complement negation for alignment mask
generation, use bitwise not and addition. This dodges warnings from
MSVC, and should be strength-reduced by compiler optimization anyway.
Rather than protecting dss operations with a mutex, use atomic
operations. This has negligible impact on synchronization overhead
during typical dss allocation, but is a substantial improvement for
extent_in_dss() and the newly added extent_dss_mergeable(), which can be
called multiple times during extent deallocations.
This change also has the advantage of avoiding tsd in deallocation paths
associated with purging, which resolves potential deadlocks during
thread exit due to attempted tsd resurrection.
This resolves#425.
Add spin_t and spin_{init,adaptive}(), which provide a simple
abstraction for adaptive spinning.
Adaptively spin during busy waits in bootstrapping and rtree node
initialization.
Simplify decay-based purging attempts to only be triggered when the
epoch is advanced, rather than every time purgeable memory increases.
In a correctly functioning system (not previously the case; see below),
this only causes a behavior difference if during subsequent purge
attempts the least recently used (LRU) purgeable memory extent is
initially too large to be purged, but that memory is reused between
attempts and one or more of the next LRU purgeable memory extents are
small enough to be purged. In practice this is an arbitrary behavior
change that is within the set of acceptable behaviors.
As for the purging fix, assure that arena->decay.ndirty is recorded
*after* the epoch advance and associated purging occurs. Prior to this
fix, it was possible for purging during epoch advance to cause a
substantially underrepresentative (arena->ndirty - arena->decay.ndirty),
i.e. the number of dirty pages attributed to the current epoch was too
low, and a series of unintended purges could result. This fix is also
relevant in the context of the simplification described above, but the
bug's impact would be limited to over-purging at epoch advances.
Instead, move the epoch backward in time. Additionally, add
nstime_monotonic() and use it in debug builds to assert that time only
goes backward if nstime_update() is using a non-monotonic time source.
Add missing #include <time.h>. The critical time facilities appear to
have been transitively included via unistd.h and sys/time.h, but in
principle this omission was capable of having caused
clock_gettime(CLOCK_MONOTONIC, ...) to have been overlooked in favor of
gettimeofday(), which in turn could cause spurious non-monotonic time
updates.
Refactor nstime_get() out of nstime_update() and add configure tests for
all variants.
Add CLOCK_MONOTONIC_RAW support (Linux-specific) and
mach_absolute_time() support (OS X-specific).
Do not fall back to clock_gettime(CLOCK_REALTIME, ...). This was a
fragile Linux-specific workaround, which we're unlikely to use at all
now that clock_gettime(CLOCK_MONOTONIC_RAW, ...) is supported, and if we
have no choice besides non-monotonic clocks, gettimeofday() is only
incrementally worse.
Avoid calling s2u() on raw extent sizes in extent_recycle().
Clamp psz2ind() (implemented as psz2ind_clamp()) when inserting/removing
into/from size-segregated extent heaps.
GCC 4.9.3 cross-compiled for sparc64 defines __sparc_v9__, not
__sparc64__ nor __sparcv9. This prevents LG_QUANTUM from being defined
properly. Adding this new value to the check solves the issue.
Add a configure check for __builtin_unreachable instead of basing its
availability on the __GNUC__ version. On OS X using gcc (a real gcc, not the
bundled version that's just a gcc front-end) leads to a linker assertion:
https://github.com/jemalloc/jemalloc/issues/266
It turns out that this is caused by a gcc bug resulting from the use of
__builtin_unreachable():
https://gcc.gnu.org/bugzilla/show_bug.cgi?id=57438
To work around this bug, check that __builtin_unreachable() actually works at
configure time, and if it doesn't use abort() instead. The check is based on
https://gcc.gnu.org/bugzilla/show_bug.cgi?id=57438#c21.
With this `make check` passes with a homebrew installed gcc-5 and gcc-6.
Some bug (either in the red-black tree code, or in the pgi compiler) seems to
cause red-black trees to become unbalanced. This issue seems to go away if we
don't use compact red-black trees. Since red-black trees don't seem to be used
much anymore, I opted for what seems to be an easy fix here instead of digging
in and trying to find the root cause of the bug.
Some context in case it's helpful:
I experienced a ton of segfaults while using pgi as Chapel's target compiler
with jemalloc 4.0.4. The little bit of debugging I did pointed me somewhere
deep in red-black tree manipulation, but I didn't get a chance to investigate
further. It looks like 4.2.0 replaced most uses of red-black trees with
pairing-heaps, which seems to avoid whatever bug I was hitting.
However, `make check_unit` was still failing on the rb test, so I figured the
core issue was just being masked. Here's the `make check_unit` failure:
```sh
=== test/unit/rb ===
test_rb_empty: pass
tree_recurse:test/unit/rb.c:90: Failed assertion: (((_Bool) (((uintptr_t) (left_node)->link.rbn_right_red) & ((size_t)1)))) == (false) --> true != false: Node should be black
test_rb_random:test/unit/rb.c:274: Failed assertion: (imbalances) == (0) --> 1 != 0: Tree is unbalanced
tree_recurse:test/unit/rb.c:90: Failed assertion: (((_Bool) (((uintptr_t) (left_node)->link.rbn_right_red) & ((size_t)1)))) == (false) --> true != false: Node should be black
test_rb_random:test/unit/rb.c:274: Failed assertion: (imbalances) == (0) --> 1 != 0: Tree is unbalanced
node_remove:test/unit/rb.c:190: Failed assertion: (imbalances) == (0) --> 2 != 0: Tree is unbalanced
<jemalloc>: test/unit/rb.c:43: Failed assertion: "pathp[-1].cmp < 0"
test/test.sh: line 22: 12926 Aborted
Test harness error
```
While starting to debug I saw the RB_COMPACT option and decided to check if
turning that off resolved the bug. It seems to have fixed it (`make check_unit`
passes and the segfaults under Chapel are gone) so it seems like on okay
work-around. I'd imagine this has performance implications for red-black trees
under pgi, but if they're not going to be used much anymore it's probably not a
big deal.
Revert 245ae6036c (Support --with-lg-page
values larger than actual page size.), because it could cause VM map
fragmentation if the kernel grows mmap()ed memory downward.
This resolves#391.
rtree-based extent lookups remain more expensive than chunk-based run
lookups, but with this optimization the fast path slowdown is ~3 CPU
cycles per metadata lookup (on Intel Core i7-4980HQ), versus ~11 cycles
prior. The path caching speedup tends to degrade gracefully unless
allocated memory is spread far apart (as is the case when using a
mixture of sbrk() and mmap()).
In the case where prof_alloc_prep() is called with an over-estimate of
allocation size, and sampling doesn't end up being triggered, the tctx
must be discarded.
When an allocation is large enough to trigger multiple dumps, use
modular math rather than subtraction to reset the interval counter.
Prior to this change, it was possible for a single allocation to cause
many subsequent allocations to all trigger profile dumps.
When updating usable size for a sampled object, try to cancel out
the difference between LARGE_MINCLASS and usable size from the interval
counter.
