Expand and restructure the rtree API such that all common operations can
be achieved with minimal work, regardless of whether the rtree leaf
fields are independent versus packed into a single atomic pointer.
Rather than storing usize only for large (and prof-promoted)
allocations, store the size class index for allocations that reside
within the extent, such that the size class index is valid for all
extents that contain extant allocations, and invalid otherwise (mainly
to make debugging simpler).
The new feature, opt.percpu_arena, determines thread-arena association
dynamically based CPU id. Three modes are supported: "percpu", "phycpu"
and disabled.
"percpu" uses the current core id (with help from sched_getcpu())
directly as the arena index, while "phycpu" will assign threads on the
same physical CPU to the same arena. In other words, "percpu" means # of
arenas == # of CPUs, while "phycpu" has # of arenas == 1/2 * (# of
CPUs). Note that no runtime check on whether hyper threading is enabled
is added yet.
When enabled, threads will be migrated between arenas when a CPU change
is detected. In the current design, to reduce overhead from reading CPU
id, each arena tracks the thread accessed most recently. When a new
thread comes in, we will read CPU id and update arena if necessary.
This is the first header refactoring diff, #533. It splits the assert and util
components into separate, hermetic, header files. In the process, it splits out
two of the large sub-components of util (the stdio.h replacement, and bit
manipulation routines) into their own components (malloc_io.h and bit_util.h).
This is mostly to break up cyclic dependencies, but it also breaks off a good
chunk of the catch-all-ness of util, which is nice.
This introduces a backport of C11 atomics. It has four implementations; ranked
in order of preference, they are:
- GCC/Clang __atomic builtins
- GCC/Clang __sync builtins
- MSVC _Interlocked builtins
- C11 atomics, from <stdatomic.h>
The primary advantages are:
- Close adherence to the standard API gives us a defined memory model.
- Type safety: atomic objects are now separate types from non-atomic ones, so
that it's impossible to mix up atomic and non-atomic updates (which is
undefined behavior that compilers are starting to take advantage of).
- Efficiency: we can specify ordering for operations, avoiding fences and
atomic operations on strongly ordered architectures (example:
`atomic_write_u32(ptr, val);` involves a CAS loop, whereas
`atomic_store(ptr, val, ATOMIC_RELEASE);` is a plain store.
This diff leaves in the current atomics API (implementing them in terms of the
backport). This lets us transition uses over piecemeal.
Testing:
This is by nature hard to test. I've manually tested the first three options on
Linux on gcc by futzing with the #defines manually, on freebsd with gcc and
clang, on MSVC, and on OS X with clang. All of these were x86 machines though,
and we don't have any test infrastructure set up for non-x86 platforms.
Refactor arena and extent locking protocols such that arena and
extent locks are never held when calling into the extent_*_wrapper()
API. This requires extra care during purging since the arena lock no
longer protects the inner purging logic. It also requires extra care to
protect extents from being merged with adjacent extents.
Convert extent_t's 'active' flag to an enumerated 'state', so that
retained extents are explicitly marked as such, rather than depending on
ring linkage state.
Refactor the extent collections (and their synchronization) for cached
and retained extents into extents_t. Incorporate LRU functionality to
support purging. Incorporate page count accounting, which replaces
arena->ndirty and arena->stats.retained.
Assert that no core locks are held when entering any internal
[de]allocation functions. This is in addition to existing assertions
that no locks are held when entering external [de]allocation functions.
Audit and document synchronization protocols for all arena_t fields.
This fixes a potential deadlock due to recursive allocation during
gdump, in a similar fashion to b49c649bc1
(Fix lock order reversal during gdump.), but with a necessarily much
broader code impact.
The SDK jemalloc is built against might be not be the latest for various
reasons, but the resulting binary ought to work on newer versions of
OSX.
In order to ensure this, we need the fullest definitions possible, so
copy what we need from the latest version of malloc/malloc.h available
on opensource.apple.com.
This is part of a broader change to make header files better represent the
dependencies between one another (see
https://github.com/jemalloc/jemalloc/issues/533). It breaks up component headers
into smaller parts that can be made to have a simpler dependency graph.
For the autogenerated headers (smoothstep.h and size_classes.h), no splitting
was necessary, so I didn't add support to emit multiple headers.
Refactor ctl_stats_t to be a demand-zeroed non-growing data structure.
To keep the size from being onerous (~60 MiB) on 32-bit systems, convert
the arenas field to contain pointers rather than directly embedded
ctl_arena_stats_t elements.
Add/rename related mallctls:
- Add stats.arenas.<i>.base .
- Rename stats.arenas.<i>.metadata to stats.arenas.<i>.internal .
- Add stats.arenas.<i>.resident .
Modify the arenas.extend mallctl to take an optional (extent_hooks_t *)
argument so that it is possible for all base allocations to be serviced
by the specified extent hooks.
This resolves#463.
Add the --with-lg-hugepage configure option, but automatically configure
LG_HUGEPAGE even if it isn't specified.
Add the pages_[no]huge() functions, which toggle huge page state via
madvise(..., MADV_[NO]HUGEPAGE) calls.
Adds cpp bindings for jemalloc, along with necessary autoconf settings.
This is mostly to add sized deallocation support, which can't be added
from C directly. Sized deallocation is ~10% microbench improvement.
* Import ax_cxx_compile_stdcxx.m4 from the autoconf repo, seems like the
easiest way to get c++14 detection.
* Adds various other changes, like CXXFLAGS, to configure.ac.
* Adds new rules to Makefile.in for src/jemalloc-cpp.cpp, and a basic
unittest.
* Both new and delete are overridden, to ensure jemalloc is used for
both.
* TODO future enhancement of avoiding extra PLT thunks for new and
delete - sdallocx and malloc are publicly exported jemalloc symbols,
using an alias would link them directly. Unfortunately, was having
trouble getting it to play nice with jemalloc's namespace support.
Testing:
Tested gcc 4.8, gcc 5, gcc 5.2, clang 4.0. Only gcc >= 5 has sized
deallocation support, verified that the rest build correctly.
Tested mac osx and Centos.
Tested --with-jemalloc-prefix and --without-export.
This resolves#202.
Add an "over-size" extent heap in which to store extents which exceed
the maximum size class (plus cache-oblivious padding, if enabled).
Remove psz2ind_clamp() and use psz2ind() instead so that trying to
allocate the maximum size class can in principle succeed. In practice,
this allows assertions to hold so that OOM errors can be successfully
generated.
Rather than relying on two's complement negation for alignment mask
generation, use bitwise not and addition. This dodges warnings from
MSVC, and should be strength-reduced by compiler optimization anyway.
Add spin_t and spin_{init,adaptive}(), which provide a simple
abstraction for adaptive spinning.
Adaptively spin during busy waits in bootstrapping and rtree node
initialization.
Avoid calling s2u() on raw extent sizes in extent_recycle().
Clamp psz2ind() (implemented as psz2ind_clamp()) when inserting/removing
into/from size-segregated extent heaps.
GCC 4.9.3 cross-compiled for sparc64 defines __sparc_v9__, not
__sparc64__ nor __sparcv9. This prevents LG_QUANTUM from being defined
properly. Adding this new value to the check solves the issue.
Some bug (either in the red-black tree code, or in the pgi compiler) seems to
cause red-black trees to become unbalanced. This issue seems to go away if we
don't use compact red-black trees. Since red-black trees don't seem to be used
much anymore, I opted for what seems to be an easy fix here instead of digging
in and trying to find the root cause of the bug.
Some context in case it's helpful:
I experienced a ton of segfaults while using pgi as Chapel's target compiler
with jemalloc 4.0.4. The little bit of debugging I did pointed me somewhere
deep in red-black tree manipulation, but I didn't get a chance to investigate
further. It looks like 4.2.0 replaced most uses of red-black trees with
pairing-heaps, which seems to avoid whatever bug I was hitting.
However, `make check_unit` was still failing on the rb test, so I figured the
core issue was just being masked. Here's the `make check_unit` failure:
```sh
=== test/unit/rb ===
test_rb_empty: pass
tree_recurse:test/unit/rb.c:90: Failed assertion: (((_Bool) (((uintptr_t) (left_node)->link.rbn_right_red) & ((size_t)1)))) == (false) --> true != false: Node should be black
test_rb_random:test/unit/rb.c:274: Failed assertion: (imbalances) == (0) --> 1 != 0: Tree is unbalanced
tree_recurse:test/unit/rb.c:90: Failed assertion: (((_Bool) (((uintptr_t) (left_node)->link.rbn_right_red) & ((size_t)1)))) == (false) --> true != false: Node should be black
test_rb_random:test/unit/rb.c:274: Failed assertion: (imbalances) == (0) --> 1 != 0: Tree is unbalanced
node_remove:test/unit/rb.c:190: Failed assertion: (imbalances) == (0) --> 2 != 0: Tree is unbalanced
<jemalloc>: test/unit/rb.c:43: Failed assertion: "pathp[-1].cmp < 0"
test/test.sh: line 22: 12926 Aborted
Test harness error
```
While starting to debug I saw the RB_COMPACT option and decided to check if
turning that off resolved the bug. It seems to have fixed it (`make check_unit`
passes and the segfaults under Chapel are gone) so it seems like on okay
work-around. I'd imagine this has performance implications for red-black trees
under pgi, but if they're not going to be used much anymore it's probably not a
big deal.
Revert 245ae6036c (Support --with-lg-page
values larger than actual page size.), because it could cause VM map
fragmentation if the kernel grows mmap()ed memory downward.
This resolves#391.
Look up chunk metadata via the radix tree, rather than using
CHUNK_ADDR2BASE().
Propagate pointer's containing extent.
Minimize extent lookups by doing a single lookup (e.g. in free()) and
propagating the pointer's extent into nearly all the functions that may
need it.
Use pszind_t size classes rather than szind_t size classes, and always
reserve space for NPSIZES elements. This removes unused heaps that are
not multiples of the page size, and adds (currently) unused heaps for
all huge size classes, with the immediate benefit that the size of
arena_t allocations is constant (no longer dependent on chunk size).
These compute size classes and indices similarly to size2index(),
index2size() and s2u(), respectively, but using the subset of size
classes that are multiples of the page size. Note that pszind_t and
szind_t are not interchangeable.
